PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0028s0024.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 293aa    MW: 33064.9 Da    PI: 9.3856
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0028s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.61.9e-1720107195
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkv      ++s+ l +p  f++ +  +   +    l+d +gr W+v l  ++ ++++++++GW++Fv++  L eg+f++F++d+ ++ 
  Kaladp0028s0024.1.p  20 FFKVY--LARFSSHHLKIPPAFVKYCVRN--LPERALLKDVNGRAWDVGL--DRADDGMFIRDGWEKFVDDAALSEGEFLIFTYDQ-DDL 102
                          66776..77889999********666433..455699*************..********************************98.555 PP

                          ..EEE CS
                   B3  91 elvvk 95 
                          ++vvk
  Kaladp0028s0024.1.p 103 TFVVK 107
                          55665 PP

2B335.61.7e-111942821897
                          --HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3  18 lpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          l+k+ a+++              +++   + t++l+     +W+ k+ ++ k+gr +l++GW +F ++n+Lk+gD + F+++ +   +++
  Kaladp0028s0024.1.p 194 LSKTMAKSNklklnldgkllkkhNIQ--MHPTVKLYIGGLSKWTTKF-VTSKDGRLYLGSGWTHFYHENDLKAGDECDFEFVLD--NRMR 278
                          55555555544333333332211444..333777777777*******.6888899*************************7632..2334 PP

                          EEEE CS
                   B3  94 vkvf 97 
                           +++
  Kaladp0028s0024.1.p 279 ARIC 282
                          4554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-2117114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-1917108IPR015300DNA-binding pseudobarrel domain
CDDcd100171.96E-1618107No hitNo description
PROSITE profilePS5086312.7618112IPR003340B3 DNA binding domain
PfamPF023622.6E-1520107IPR003340B3 DNA binding domain
SMARTSM010191.7E-1420111IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-12191275IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.3E-13193282IPR015300DNA-binding pseudobarrel domain
CDDcd100179.92E-8193283No hitNo description
SMARTSM010190.012194285IPR003340B3 DNA binding domain
PfamPF023622.9E-9205282IPR003340B3 DNA binding domain
PROSITE profilePS508639.798233285IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MTRQRTRPSH SAAGDVPPEF FKVYLARFSS HHLKIPPAFV KYCVRNLPER ALLKDVNGRA  60
WDVGLDRADD GMFIRDGWEK FVDDAALSEG EFLIFTYDQD DLTFVVKRYG IHGCRKDVCL  120
ASNKEIVCVN LKDVEEDAGD HELAPCTDGS GGSIRNLRPL KSRLRISGNK AVAAKGDLAW  180
SEASGRIVSN CLHLSKTMAK SNKLKLNLDG KLLKKHNIQM HPTVKLYIGG LSKWTTKFVT  240
SKDGRLYLGS GWTHFYHEND LKAGDECDFE FVLDNRMRAR ICKQIRVQIR HI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.15e-21B3 family protein